AfterCodecs is a native render queue plugin for After Effects that allows you to render directly to the codecs listed below.
Need to render ProRes on Windows?
Want to render directly to a small file size, high quality H264 straight from the After Effects render queue?
AfterCodecs can do it without requiring any intermediate files!

Codecs
    ProRes : LT / Proxy / Normal / HQ and even 444 that supports Alpha Channel.
    x264 : best H264/AVC implementation, outperforming both Adobe Media Encoder and QuickTime H264.
    x265 : files are 30% lighter than x264 and it also supports 8K resolution.
    x264 RGB : same as x264 but avoids YUV colorspace, best for storing separate channels in one video (UV map, Alphas...) for power users only.

Home Page - http://aescripts.com/aftercodecs/